PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g52080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 187aa    MW: 21932.8 Da    PI: 10.4899
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g52080genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002199122123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 y+C+ Cg+ ++++ +LkrH +  H
  CA00g52080  99 YVCSVCGRKCKTHLDLKRHFKQlH 122
                 9******************98777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.14E-598125No hitNo description
SMARTSM003550.005299122IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78399127IPR007087Zinc finger, C2H2
PROSITE patternPS000280101122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MPRCPTREAG IQDIHYKIKP KKVVILWDLD NKPPRGTSYE AAMSLKKVAQ CFGEVVDMSA  60
YANRHAFIHL PRWVVEQRHE RRHLGILERK GVVTPSEPYV CSVCGRKCKT HLDLKRHFKQ  120
LHERERGKKL CRMRSLKGRK RQRFEERFVD GNYKYRDSML ASILYCPRFK CLVLSVRGCW  180
SPTSMD*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154501e-137AC215450.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0026H18, complete sequence.
GenBankHG9755141e-137HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560373.15e-90PREDICTED: uncharacterized protein LOC107859780
TrEMBLM0ZME33e-86M0ZME3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000038449e-86(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122681518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-71C2H2-like zinc finger protein